STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LIM0_ORYLAUncharacterized protein. (726 aa)    
Predicted Functional Partners:
ENSORLP00000034659
Reelin domain-containing protein.
 
     0.944
LOC101167610
Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor.
    
 0.712
vldlr
Very low density lipoprotein receptor.
    
 0.692
LOC101172441
DAB adaptor protein 1b.
    
 0.689
dab1
DAB adaptor protein 1a.
    
 0.689
LOC101161779
Low density lipoprotein receptor b.
    
 0.667
LOC101174135
Uncharacterized protein.
    
 0.667
LOC101166361
Uncharacterized protein.
    
 0.667
ENSORLP00000037127
Uncharacterized protein.
    
 0.667
LOC111947820
Uncharacterized protein.
    
 0.667
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.