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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lamp1Lysosomal associated membrane protein 1a. (420 aa)    
Predicted Functional Partners:
lamp2
Lysosomal-associated membrane protein 2.
  
0.990
nprl2
NPR2 like, GATOR1 complex subunit.
    
 
 0.925
rptor
Regulatory associated protein of MTOR, complex 1.
    
 
 0.918
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 
 0.913
wdr24
WD repeat domain 24.
    
 
 0.911
Depdc5
Uncharacterized protein.
    
 
 0.909
wdr59
WD repeat domain 59.
    
 
 0.906
kptn
Kaptin (actin binding protein).
    
 
 0.904
SZT2
SZT2 subunit of KICSTOR complex.
    
   0.904
seh1l
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
    
   0.904
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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