Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lamp1Lysosomal associated membrane protein 1a. (420 aa)    
Predicted Functional Partners:
lamp2
Lysosomal-associated membrane protein 2.
  
0.982
rptor
Regulatory associated protein of MTOR, complex 1.
    
 
 0.970
nprl2
NPR2 like, GATOR1 complex subunit.
    
 
 0.970
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 
 0.969
wdr24
WD repeat domain 24.
    
 
 0.965
Depdc5
Uncharacterized protein.
    
 
 0.964
H2L4B7_ORYLA
Mechanistic target of rapamycin kinase; Belongs to the PI3/PI4-kinase family.
    
 
 0.963
Mtor
Serine/threonine-protein kinase TOR.
    
 
 0.963
kptn
Kaptin (actin binding protein).
    
 
 0.962
SZT2
SZT2 subunit of KICSTOR complex.
    
   0.962
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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