STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kiaa0100Si:ch211-259g3.4. (1982 aa)    
Predicted Functional Partners:
lpcat2
Lysophosphatidylcholine acyltransferase 2.
      
 0.589
uhrf1bp1l
UHRF1 binding protein 1-like.
      
 0.568
rnf32
Ring finger protein 32.
    
 
 0.519
mtif2
Mitochondrial translational initiation factor 2.
   
 0.508
pla2g15
Phospholipase A2, group XV.
    
   0.487
lcat
Lecithin-cholesterol acyltransferase.
    
   0.487
Mrps27
Mitochondrial ribosomal protein S27.
    
  0.470
slc39a1
Solute carrier family 39 member 1.
 
    
 0.427
LOC101163102
Stromal cell-derived factor 2.
 
      0.424
vps13d
Vacuolar protein sorting 13 homolog D.
   
  
 0.408
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.