STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTPRDProtein tyrosine phosphatase receptor type D. (1935 aa)    
Predicted Functional Partners:
slitrk3
SLIT and NTRK-like family, member 3a.
    
 0.943
LOC101167411
SLIT and NTRK-like family, member 3b.
    
  0.907
PTPRD-2
Uncharacterized protein.
  
  
 
0.901
il1rap
Uncharacterized protein.
    
 0.835
SLITRK1
SLIT and NTRK like family member 1.
    
 0.641
grb2
Growth factor receptor-bound protein 2b.
    
 0.640
LOC105356388
Leucine rich repeat and fibronectin type III domain containing 4b.
    
 0.637
slitrk2
SLIT and NTRK-like family, member 2.
    
 0.626
GRB14
Growth factor receptor bound protein 14.
   
 0.621
rpl30
Ribosomal protein L30.
   
  
 0.612
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.