STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dync2li1Dynein, cytoplasmic 2, light intermediate chain 1. (367 aa)    
Predicted Functional Partners:
wdr34
WD repeat domain 34.
    
 0.999
wdr60
WD repeat domain 60.
    
 0.998
tctex1d2
Tctex1 domain containing 2.
   
 0.996
LOC101160277
Dynein light chain roadblock.
    
 0.995
ENSORLP00000033865
Uncharacterized protein.
    
 0.989
DYNC2H1
Dynein cytoplasmic 2 heavy chain 1.
   
 0.979
LOC101171417
Dynein light chain.
    
 0.978
LOC101162462
Dynein light chain.
    
 0.978
LOC101174042
Dynein light chain.
    
 0.978
LOC101158306
Dynein, cytoplasmic 1, intermediate chain 2b.
    
 0.968
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.