ARHGAP6 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ARHGAP6

Rho GTPase activating protein 6. (492 aa)

Predicted Functional Partners:

ENSORLP00000041965

0.888

rhbdl1

0.782

anks3

0.682

rhot2

0.682

wdr24

0.681

cog3

0.662

Wdr90

0.633

LOC101167157

0.612

PCDH8

0.609

map3k2

0.600

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARHGAP6	ENSORLP00000041965	ENSORLP00000005892	ENSORLP00000041965	Rho GTPase activating protein 6.	Rho-GAP domain-containing protein.	0.888
ARHGAP6	LOC101167157	ENSORLP00000005892	ENSORLP00000022241	Rho GTPase activating protein 6.	Protocadherin 8.	0.612
ARHGAP6	PCDH8	ENSORLP00000005892	ENSORLP00000013952	Rho GTPase activating protein 6.	Protocadherin 8.	0.609
ARHGAP6	Wdr90	ENSORLP00000005892	ENSORLP00000039753	Rho GTPase activating protein 6.	WD_REPEATS_REGION domain-containing protein.	0.633
ARHGAP6	anks3	ENSORLP00000005892	ENSORLP00000026941	Rho GTPase activating protein 6.	Ankyrin repeat and sterile alpha motif domain containing 3.	0.682
ARHGAP6	cog3	ENSORLP00000005892	ENSORLP00000022258	Rho GTPase activating protein 6.	Component of oligomeric golgi complex 3.	0.662
ARHGAP6	map3k2	ENSORLP00000005892	ENSORLP00000000797	Rho GTPase activating protein 6.	Mitogen-activated protein kinase kinase kinase 2.	0.600
ARHGAP6	rhbdl1	ENSORLP00000005892	ENSORLP00000042926	Rho GTPase activating protein 6.	Rhomboid-related protein 1; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.	0.782
ARHGAP6	rhot2	ENSORLP00000005892	ENSORLP00000027890	Rho GTPase activating protein 6.	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	0.682
ARHGAP6	wdr24	ENSORLP00000005892	ENSORLP00000009609	Rho GTPase activating protein 6.	WD repeat domain 24.	0.681
ENSORLP00000041965	ARHGAP6	ENSORLP00000041965	ENSORLP00000005892	Rho-GAP domain-containing protein.	Rho GTPase activating protein 6.	0.888
ENSORLP00000041965	rhbdl1	ENSORLP00000041965	ENSORLP00000042926	Rho-GAP domain-containing protein.	Rhomboid-related protein 1; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.	0.464
LOC101167157	ARHGAP6	ENSORLP00000022241	ENSORLP00000005892	Protocadherin 8.	Rho GTPase activating protein 6.	0.612
LOC101167157	Wdr90	ENSORLP00000022241	ENSORLP00000039753	Protocadherin 8.	WD_REPEATS_REGION domain-containing protein.	0.662
LOC101167157	anks3	ENSORLP00000022241	ENSORLP00000026941	Protocadherin 8.	Ankyrin repeat and sterile alpha motif domain containing 3.	0.664
LOC101167157	cog3	ENSORLP00000022241	ENSORLP00000022258	Protocadherin 8.	Component of oligomeric golgi complex 3.	0.660
LOC101167157	rhbdl1	ENSORLP00000022241	ENSORLP00000042926	Protocadherin 8.	Rhomboid-related protein 1; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.	0.663
LOC101167157	rhot2	ENSORLP00000022241	ENSORLP00000027890	Protocadherin 8.	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	0.663
LOC101167157	wdr24	ENSORLP00000022241	ENSORLP00000009609	Protocadherin 8.	WD repeat domain 24.	0.656
PCDH8	ARHGAP6	ENSORLP00000013952	ENSORLP00000005892	Protocadherin 8.	Rho GTPase activating protein 6.	0.609