Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPQCarboxypeptidase Q. (480 aa)    
Predicted Functional Partners:
mtfr1
Mitochondrial fission regulator 1.
     
 0.778
crcp
Calcitonin gene-related peptide-receptor component protein.
      
 0.747
nt5dc1
5'-nucleotidase domain containing 1.
      
 0.707
LOC101175224
Si:dkey-43k4.5; Belongs to the potassium channel family.
    
 
 0.696
LOC101168028
BCL2 like 10.
   
  
 0.693
pigk
GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.
      
 0.690
arg2
Arginase.
   
 
 0.680
LOC101171114
Arginase.
   
 
 0.680
ccdc152
Uncharacterized protein.
      
 0.676
armh4
Uncharacterized protein.
      
 0.632
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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