Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ttc34Tetratricopeptide repeat domain 34. (1099 aa)    
Predicted Functional Partners:
mis12
MIS12 kinetochore complex component.
      
 0.748
galnt9
Polypeptide N-acetylgalactosaminyltransferase.
   
  
 0.741
lrrc58
Leucine rich repeat containing 58b.
     
 0.610
LOC101156884
Phosphoinositide phospholipase C.
      
 0.603
plch2
Phosphoinositide phospholipase C.
      
 0.603
pank4
Pantothenate kinase.
    
 
 0.501
prxl2b
Peroxiredoxin like 2B.
      
 0.498
LOC101162204
TBC1 domain family, member 7.
      
 0.498
gfod2
Glucose-fructose oxidoreductase domain containing 2.
    
 
 0.483
LOC101174141
Glucose-fructose oxidoreductase domain containing 1.
    
 
 0.483
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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