Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
mrs2Magnesium transporter. (478 aa)    
Predicted Functional Partners:
mmgt1
Membrane magnesium transporter 1.
      
 0.693
pum1
Pumilio RNA-binding family member 1.
    
   0.620
pum2
Pumilio 2.
    
   0.620
ubash3b
Ubiquitin associated and SH3 domain containing Ba.
      
 0.570
tomm5
Translocase of outer mitochondrial membrane 5 homolog (yeast).
      
 0.568
LOC101159200
Transient receptor potential cation channel, subfamily M, member 6.
      
 0.567
nipa2
NIPA magnesium transporter 2.
      
 0.546
LOC101168778
Uncharacterized protein.
      
 0.539
naa50
N(alpha)-acetyltransferase 50, NatE catalytic subunit.
      
 0.523
trpm7
Transient receptor potential cation channel, subfamily M, member 7.
      
 0.517
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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