STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmco3Transmembrane and coiled-coil domains 3. (670 aa)    
Predicted Functional Partners:
tfdp1
Transcription factor.
 
    
 0.761
rimklb
Ribosomal modification protein rimK-like family member A.
     
 0.704
treh
Trehalase.
      
 0.664
yipf6
Protein YIPF.
      
 0.639
LOC111946266
NAD(P)H dehydrogenase, quinone 1.
  
 
 0.611
ENSORLP00000026404
Uncharacterized protein.
  
 
 0.611
nqo1
Flavodoxin_2 domain-containing protein.
  
 
 0.611
LOC101170381
Flavodoxin_2 domain-containing protein.
  
 
 0.611
gtpbp6
GTP binding protein 6 (putative).
     
 0.596
zmpste24
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
  
  
 0.590
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.