Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
proser1Proline and serine rich 1. (781 aa)    
Predicted Functional Partners:
NHLRC3
NHL repeat containing 3.
    
 0.899
ngrn
Neugrin, neurite outgrowth associated.
      
 0.661
LOC101155565
Transmembrane protein 205.
      
 0.661
LHFPL6
LHFPL tetraspan subfamily member 6.
      
 0.606
insyn1
Inhibitory synaptic factor 1.
      
 0.603
mettl11b
Methyltransferase like 11B.
      
 0.587
chst2
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.498
LOC101175584
FRAS1 related extracellular matrix 2b.
    
 0.485
Frem3
Fras1 related extracellular matrix 3.
    
 0.485
sacs
Sacsin molecular chaperone.
    
 0.412
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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