STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpnmbGlycoprotein (transmembrane) nmb. (612 aa)    
Predicted Functional Partners:
dct
Dopachrome tautomerase.
      
 0.758
LOC101167075
Apolipoprotein Da, duplicate 1; Belongs to the calycin superfamily. Lipocalin family.
      
 0.542
sphkap
SPHK1 interactor, AKAP domain containing.
  
   
 0.537
MLANA
Uncharacterized protein.
      
 0.536
tfec
Transcription factor EC.
      
 0.533
tyrp1
Tyrosinase related protein 1.
      
 0.532
LOC101170718
Apolipoprotein Db; Belongs to the calycin superfamily. Lipocalin family.
      
 0.527
LOC101170232
Apolipoprotein Db; Belongs to the calycin superfamily. Lipocalin family.
      
 0.527
LOC101161673
Apolipoprotein Eb.
   
  
 0.520
LOC101169645
Uncharacterized protein.
      
 0.519
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.