STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plk2Serine/threonine-protein kinase PLK. (689 aa)    
Predicted Functional Partners:
bub1
BUB1 mitotic checkpoint serine/threonine kinase.
   
 0.952
cdc20
WD_REPEATS_REGION domain-containing protein.
   
 0.939
cdc20b
WD_REPEATS_REGION domain-containing protein.
   
 0.939
espl1
Extra spindle pole bodies like 1, separase.
   
 0.933
mad2l1
HORMA domain-containing protein.
   
 0.927
KIF23
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.926
LOC101170342
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.926
bora
Bora aurora kinase A activator.
   
 0.914
foxm1
Fork-head domain-containing protein.
   
 0.914
cdc25b
Rhodanese domain-containing protein.
   
 0.912
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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