STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Micall2Calponin-homology (CH) domain-containing protein. (101 aa)    
Predicted Functional Partners:
LOC101155449
Uncharacterized protein.
  
  
 
0.902
actn1
Actinin, alpha 1.
  
  
 
0.902
RAB8A
RAB8A, member RAS oncogene family.
     
  0.900
LOC101170877
RAB8A, member RAS oncogene family.
     
  0.900
ENSORLP00000028712
Uncharacterized protein.
     
  0.900
rab13
Uncharacterized protein.
     
  0.900
LOC101162740
Uncharacterized protein.
     
  0.900
rab8b
Multiple EGF-like-domains 8.
     
  0.900
LOC101158422
Mical-like 2b.
  
  
 
0.900
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.