Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LJ05_ORYLAUncharacterized protein. (301 aa)    
Predicted Functional Partners:
prdm16
Si:ch211-263k4.2.
      
 0.693
hoxc9
Homeobox protein Hox-C9; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Abd-B homeobox family.
      
 0.601
LOC101159391
Cell death inducing DFFA like effector a.
      
 0.570
LOC101165396
Solute carrier family 27 member 1a.
      
 0.535
MPZL2
Myelin protein zero like 2.
      
 0.487
LOC111946374
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.483
LOC101168710
TNFR-Cys domain-containing protein.
      
 0.432
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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