H2LJ06_ORYLA protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2LJ06_ORYLA

Uncharacterized protein. (189 aa)

Predicted Functional Partners:

CASP6

0.639

LOC101169703

0.559

ube2i

0.559

sumo2

0.533

sumo2-2

0.533

sumo4

0.533

sumo1

0.529

kctd2

0.522

cux2

0.434

LOC100049265

0.431

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASP6	H2LJ06_ORYLA	ENSORLP00000044560	ENSORLP00000005990	Caspase 6; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.639
H2LJ06_ORYLA	CASP6	ENSORLP00000005990	ENSORLP00000044560	Uncharacterized protein.	Caspase 6; Belongs to the peptidase C14A family.	0.639
H2LJ06_ORYLA	LOC100049265	ENSORLP00000005990	ENSORLP00000010098	Uncharacterized protein.	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	0.431
H2LJ06_ORYLA	LOC101169703	ENSORLP00000005990	ENSORLP00000016945	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.559
H2LJ06_ORYLA	cux2	ENSORLP00000005990	ENSORLP00000031394	Uncharacterized protein.	Homeobox protein cut-like.	0.434
H2LJ06_ORYLA	kctd2	ENSORLP00000005990	ENSORLP00000027547	Uncharacterized protein.	Potassium channel tetramerization domain containing 2.	0.522
H2LJ06_ORYLA	sumo1	ENSORLP00000005990	ENSORLP00000000767	Uncharacterized protein.	Small ubiquitin-related modifier.	0.529
H2LJ06_ORYLA	sumo2	ENSORLP00000005990	ENSORLP00000004077	Uncharacterized protein.	Small ubiquitin-related modifier.	0.533
H2LJ06_ORYLA	sumo2-2	ENSORLP00000005990	ENSORLP00000012260	Uncharacterized protein.	Small ubiquitin-related modifier.	0.533
H2LJ06_ORYLA	sumo4	ENSORLP00000005990	ENSORLP00000036220	Uncharacterized protein.	Small ubiquitin-related modifier.	0.533
H2LJ06_ORYLA	ube2i	ENSORLP00000005990	ENSORLP00000045538	Uncharacterized protein.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.559
LOC100049265	H2LJ06_ORYLA	ENSORLP00000010098	ENSORLP00000005990	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.431
LOC101169703	H2LJ06_ORYLA	ENSORLP00000016945	ENSORLP00000005990	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.559
LOC101169703	sumo1	ENSORLP00000016945	ENSORLP00000000767	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Small ubiquitin-related modifier.	0.997
LOC101169703	sumo2	ENSORLP00000016945	ENSORLP00000004077	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Small ubiquitin-related modifier.	0.991
LOC101169703	sumo2-2	ENSORLP00000016945	ENSORLP00000012260	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Small ubiquitin-related modifier.	0.991
LOC101169703	sumo4	ENSORLP00000016945	ENSORLP00000036220	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Small ubiquitin-related modifier.	0.991
LOC101169703	ube2i	ENSORLP00000016945	ENSORLP00000045538	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.900
cux2	H2LJ06_ORYLA	ENSORLP00000031394	ENSORLP00000005990	Homeobox protein cut-like.	Uncharacterized protein.	0.434
kctd2	H2LJ06_ORYLA	ENSORLP00000027547	ENSORLP00000005990	Potassium channel tetramerization domain containing 2.	Uncharacterized protein.	0.522