STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165411Multidrug and toxin extrusion protein; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. (608 aa)    
Predicted Functional Partners:
hsd17b10
Hydroxysteroid (17-beta) dehydrogenase 10; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.705
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
   
  
 0.635
LOC101167730
Glyceraldehyde-3-phosphate dehydrogenase.
  
  
 0.562
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
  
  
 0.562
ccne2
Cyclin E2; Belongs to the cyclin family.
   
 
  0.536
ccne1
Cyclin E1; Belongs to the cyclin family.
   
 
  0.536
ndufaf6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
   
  
 0.535
H2MCJ8_ORYLA
Programmed cell death 11.
  
    0.526
trmt10c
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 0.509
trmt10b
tRNA methyltransferase 10B.
   
 0.509
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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