LOC101158557 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101158557

Miff domain-containing protein. (307 aa)

Predicted Functional Partners:

mrpl46

0.945

mrpl20

0.933

mrpl58

0.924

mrpl19

0.923

mrpl2

0.922

mrpl12

0.921

mrpl10

0.921

mrpl3

0.916

mrpl4

0.906

ndufab1

0.903

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101158557	mrpl10	ENSORLP00000006002	ENSORLP00000038958	Miff domain-containing protein.	Mitochondrial ribosomal protein L10.	0.921
LOC101158557	mrpl12	ENSORLP00000006002	ENSORLP00000008902	Miff domain-containing protein.	Mitochondrial ribosomal protein L12.	0.921
LOC101158557	mrpl19	ENSORLP00000006002	ENSORLP00000016322	Miff domain-containing protein.	Mitochondrial ribosomal protein L19.	0.923
LOC101158557	mrpl2	ENSORLP00000006002	ENSORLP00000016135	Miff domain-containing protein.	Mitochondrial ribosomal protein L2.	0.922
LOC101158557	mrpl20	ENSORLP00000006002	ENSORLP00000022918	Miff domain-containing protein.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.933
LOC101158557	mrpl3	ENSORLP00000006002	ENSORLP00000004656	Miff domain-containing protein.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.916
LOC101158557	mrpl4	ENSORLP00000006002	ENSORLP00000000106	Miff domain-containing protein.	Mitochondrial ribosomal protein L4.	0.906
LOC101158557	mrpl46	ENSORLP00000006002	ENSORLP00000018284	Miff domain-containing protein.	Mitochondrial ribosomal protein L46.	0.945
LOC101158557	mrpl58	ENSORLP00000006002	ENSORLP00000025703	Miff domain-containing protein.	Mitochondrial ribosomal protein L58.	0.924
LOC101158557	ndufab1	ENSORLP00000006002	ENSORLP00000038384	Miff domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.903
mrpl10	LOC101158557	ENSORLP00000038958	ENSORLP00000006002	Mitochondrial ribosomal protein L10.	Miff domain-containing protein.	0.921
mrpl10	mrpl12	ENSORLP00000038958	ENSORLP00000008902	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L12.	0.993
mrpl10	mrpl19	ENSORLP00000038958	ENSORLP00000016322	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L19.	0.971
mrpl10	mrpl2	ENSORLP00000038958	ENSORLP00000016135	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L2.	0.984
mrpl10	mrpl20	ENSORLP00000038958	ENSORLP00000022918	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.986
mrpl10	mrpl3	ENSORLP00000038958	ENSORLP00000004656	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.987
mrpl10	mrpl4	ENSORLP00000038958	ENSORLP00000000106	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L4.	0.984
mrpl10	mrpl46	ENSORLP00000038958	ENSORLP00000018284	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L46.	0.979
mrpl10	mrpl58	ENSORLP00000038958	ENSORLP00000025703	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L58.	0.982
mrpl10	ndufab1	ENSORLP00000038958	ENSORLP00000038384	Mitochondrial ribosomal protein L10.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.968