STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
elac1ElaC ribonuclease Z 1. (414 aa)    
Predicted Functional Partners:
ankzf1
Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1.
   
  
 0.736
slc46a2
Solute carrier family 46 member 2.
      
 0.714
tbce
Tubulin folding cofactor E.
      
 0.711
nap1l1
Nucleosome assembly protein 1-like 1; Belongs to the nucleosome assembly protein (NAP) family.
   
   0.615
LOC101172303
Nucleosome assembly protein 1-like 4b; Belongs to the nucleosome assembly protein (NAP) family.
   
   0.615
trnt1
tRNA nucleotidyl transferase, CCA-adding, 1; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.566
mblac1
Metallo-beta-lactamase domain containing 1.
      
 0.561
drosha
Drosha ribonuclease III.
  
  
 0.535
supv3l1
SUV3-like helicase.
   
  
 0.529
exosc10
Exosome component 10.
  
 
 0.527
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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