STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppargc1aPeroxisome proliferator-activated receptor gamma, coactivator 1 alpha. (1268 aa)    
Predicted Functional Partners:
LOC100125507
Estrogen-related receptor alpha.
   
 0.981
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 0.932
bud31
BUD31 homolog.
   
 0.931
xab2
XPA binding protein 2.
   
 0.928
snw1
SNW domain containing 1.
   
 0.927
isy1
ISY1 splicing factor homolog.
   
 0.915
pparg
Uncharacterized protein.
   
 0.913
LOC100302444
Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).
   
 0.904
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
   
 0.898
PPARA
Peroxisome proliferator-activated receptor alpha b.
   
 0.879
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.