LOC101172563 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101172563

Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family. (935 aa)

Predicted Functional Partners:

caskin1

0.943

LOC101168608

0.913

lin7b

0.913

lin7a

0.913

LOC101166648

0.911

LOC101168719

0.911

apba2

0.906

LOC101160976

0.906

LOC101162033

0.905

LOC101169622

0.873

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101160976	LOC101168608	ENSORLP00000043066	ENSORLP00000007427	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	Lin-7 homolog C (C. elegans); Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.718
LOC101160976	LOC101172563	ENSORLP00000043066	ENSORLP00000006053	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.906
LOC101160976	lin7a	ENSORLP00000043066	ENSORLP00000033845	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.718
LOC101160976	lin7b	ENSORLP00000043066	ENSORLP00000030603	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.718
LOC101162033	LOC101168608	ENSORLP00000010005	ENSORLP00000007427	Amyloid beta precursor protein binding family A member 3.	Lin-7 homolog C (C. elegans); Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.677
LOC101162033	LOC101172563	ENSORLP00000010005	ENSORLP00000006053	Amyloid beta precursor protein binding family A member 3.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.905
LOC101162033	lin7a	ENSORLP00000010005	ENSORLP00000033845	Amyloid beta precursor protein binding family A member 3.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.677
LOC101162033	lin7b	ENSORLP00000010005	ENSORLP00000030603	Amyloid beta precursor protein binding family A member 3.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.677
LOC101166648	LOC101168608	ENSORLP00000016914	ENSORLP00000007427	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	Lin-7 homolog C (C. elegans); Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.718
LOC101166648	LOC101172563	ENSORLP00000016914	ENSORLP00000006053	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.911
LOC101166648	lin7a	ENSORLP00000016914	ENSORLP00000033845	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.718
LOC101166648	lin7b	ENSORLP00000016914	ENSORLP00000030603	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.718
LOC101168608	LOC101160976	ENSORLP00000007427	ENSORLP00000043066	Lin-7 homolog C (C. elegans); Belongs to the eukaryotic ribosomal protein P1/P2 family.	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	0.718
LOC101168608	LOC101162033	ENSORLP00000007427	ENSORLP00000010005	Lin-7 homolog C (C. elegans); Belongs to the eukaryotic ribosomal protein P1/P2 family.	Amyloid beta precursor protein binding family A member 3.	0.677
LOC101168608	LOC101166648	ENSORLP00000007427	ENSORLP00000016914	Lin-7 homolog C (C. elegans); Belongs to the eukaryotic ribosomal protein P1/P2 family.	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	0.718
LOC101168608	LOC101168719	ENSORLP00000007427	ENSORLP00000021658	Lin-7 homolog C (C. elegans); Belongs to the eukaryotic ribosomal protein P1/P2 family.	Uncharacterized protein.	0.718
LOC101168608	LOC101172563	ENSORLP00000007427	ENSORLP00000006053	Lin-7 homolog C (C. elegans); Belongs to the eukaryotic ribosomal protein P1/P2 family.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.913
LOC101168608	apba2	ENSORLP00000007427	ENSORLP00000035297	Lin-7 homolog C (C. elegans); Belongs to the eukaryotic ribosomal protein P1/P2 family.	Amyloid beta (A4) precursor protein-binding, family A, member 2b.	0.718
LOC101168719	LOC101168608	ENSORLP00000021658	ENSORLP00000007427	Uncharacterized protein.	Lin-7 homolog C (C. elegans); Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.718
LOC101168719	LOC101172563	ENSORLP00000021658	ENSORLP00000006053	Uncharacterized protein.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.911