Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc186Si:ch211-225b10.4. (991 aa)    
Predicted Functional Partners:
casc4
Cancer susceptibility candidate 4.
      
 0.914
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
     
 0.880
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
      
 0.833
fbln5
Fibulin 5.
      
 0.809
vps54
VPS54 subunit of GARP complex.
     
 0.795
stx16
Syntaxin 16; Belongs to the syntaxin family.
     
 0.772
eipr1
EARP complex and GARP complex interacting protein 1.
      
 0.761
vps53
VPS53 subunit of GARP complex.
     
 0.760
rab2a
RAB2A, member RAS oncogene family.
    
 0.755
tspan33
Tetraspanin.
      
 0.755
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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