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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc186Si:ch211-225b10.4. (991 aa)    
Predicted Functional Partners:
eipr1
EARP complex and GARP complex interacting protein 1.
      
 0.669
vps50
VPS50 EARP/GARPII complex subunit.
      
 0.662
vps51
VPS51 subunit of GARP complex.
     
 0.660
vps54
VPS54 subunit of GARP complex.
     
 0.656
vps52
VPS52 subunit of GARP complex.
     
 0.608
rabl6
RAB, member RAS oncogene family-like 6b.
    
 
 0.568
rundc1
RUN domain containing 1.
      
 0.560
cpd
Carboxypeptidase D, a.
      
 0.560
mcm3ap
Minichromosome maintenance complex component 3 associated protein.
      
 0.558
ccdc22
Coiled-coil domain containing 22.
      
 0.558
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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