Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101154797Solute carrier family 7 member 1a. (647 aa)    
Predicted Functional Partners:
slc1a1
Amino acid transporter.
   
 
 0.688
LOC105355608
Microtubule associated tumor suppressor candidate 2a.
      
 0.666
slc1a4
Amino acid transporter.
   
 
 0.646
oat
Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.615
LOC101163850
Urea transporter; Belongs to the urea transporter family.
      
 0.614
LOC101167791
Amino acid transporter.
   
 
 0.562
LOC101160301
Amino acid transporter.
   
 
 0.557
slc1a2
Amino acid transporter.
   
 
 0.556
slc3a1
Solute carrier family 3 member 1.
   
 0.532
bckdk
Protein-serine/threonine kinase.
   
  
 0.521
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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