adal protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

adal

Adenosine deaminase-like. (347 aa)

Predicted Functional Partners:

tm2d3

0.771

cul1

0.751

ephx2

0.740

LOC101162942

0.739

aprt

0.739

polrmt

0.716

phkb

0.695

edf1

0.694

ADK

0.678

LOC101173404

0.678

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADK	LOC101162942	ENSORLP00000010723	ENSORLP00000005485	Adenosine kinase.	Zgc:174895.	0.800
ADK	LOC101173404	ENSORLP00000010723	ENSORLP00000041018	Adenosine kinase.	Adenosine kinase a.	0.901
ADK	adal	ENSORLP00000010723	ENSORLP00000006105	Adenosine kinase.	Adenosine deaminase-like.	0.678
ADK	aprt	ENSORLP00000010723	ENSORLP00000045665	Adenosine kinase.	Adenine phosphoribosyltransferase.	0.979
LOC101162942	ADK	ENSORLP00000005485	ENSORLP00000010723	Zgc:174895.	Adenosine kinase.	0.800
LOC101162942	LOC101173404	ENSORLP00000005485	ENSORLP00000041018	Zgc:174895.	Adenosine kinase a.	0.800
LOC101162942	adal	ENSORLP00000005485	ENSORLP00000006105	Zgc:174895.	Adenosine deaminase-like.	0.739
LOC101173404	ADK	ENSORLP00000041018	ENSORLP00000010723	Adenosine kinase a.	Adenosine kinase.	0.901
LOC101173404	LOC101162942	ENSORLP00000041018	ENSORLP00000005485	Adenosine kinase a.	Zgc:174895.	0.800
LOC101173404	adal	ENSORLP00000041018	ENSORLP00000006105	Adenosine kinase a.	Adenosine deaminase-like.	0.678
LOC101173404	aprt	ENSORLP00000041018	ENSORLP00000045665	Adenosine kinase a.	Adenine phosphoribosyltransferase.	0.979
adal	ADK	ENSORLP00000006105	ENSORLP00000010723	Adenosine deaminase-like.	Adenosine kinase.	0.678
adal	LOC101162942	ENSORLP00000006105	ENSORLP00000005485	Adenosine deaminase-like.	Zgc:174895.	0.739
adal	LOC101173404	ENSORLP00000006105	ENSORLP00000041018	Adenosine deaminase-like.	Adenosine kinase a.	0.678
adal	aprt	ENSORLP00000006105	ENSORLP00000045665	Adenosine deaminase-like.	Adenine phosphoribosyltransferase.	0.739
adal	cul1	ENSORLP00000006105	ENSORLP00000003749	Adenosine deaminase-like.	Cullin 1b; Belongs to the cullin family.	0.751
adal	edf1	ENSORLP00000006105	ENSORLP00000041707	Adenosine deaminase-like.	Endothelial differentiation-related factor 1.	0.694
adal	ephx2	ENSORLP00000006105	ENSORLP00000002021	Adenosine deaminase-like.	AB hydrolase-1 domain-containing protein.	0.740
adal	phkb	ENSORLP00000006105	ENSORLP00000040160	Adenosine deaminase-like.	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.	0.695
adal	polrmt	ENSORLP00000006105	ENSORLP00000005424	Adenosine deaminase-like.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.716