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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hgsnatHeparan-alpha-glucosaminide N-acetyltransferase. (661 aa)    
Predicted Functional Partners:
naglu
N-acetylglucosaminidase, alpha.
     
 0.953
sgsh
N-sulfoglucosamine sulfohydrolase (sulfamidase).
   
 
 0.938
bloc1s1
Biogenesis of lysosomal organelles complex-1, subunit 1.
      
 0.582
oxct1
Succinyl-CoA:3-ketoacid-coenzyme A transferase; Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.
      
 0.568
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
     
  0.540
sumf1
Sulfatase modifying factor 1.
   
  
 0.524
ncam1
Neural cell adhesion molecule 1b.
      
 0.518
SRSF3
Serine and arginine rich splicing factor 3b.
      
 0.513
gla
Alpha-galactosidase.
      
 0.504
pdgfrb
Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
      
 0.437
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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