STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smarcad1Uncharacterized protein. (1052 aa)    
Predicted Functional Partners:
msh2
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 
 0.830
exo1
Exonuclease 1.
    
 
 0.797
trim33
Tripartite motif containing 33.
   
 
 0.731
LOC101161205
Uncharacterized protein.
   
 
 0.731
dna2
DNA replication helicase/nuclease 2.
    
 
 0.682
LOC111948975
Uncharacterized protein.
   
 
 0.670
blm
Uncharacterized protein.
   
 
 0.576
recql4
RecQ helicase-like 4.
   
 
 0.576
tp53bp1
Tumor protein p53 binding protein, 1.
   
 
 0.571
topbp1
DNA topoisomerase II binding protein 1.
   
 
 0.558
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.