Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159193Uncharacterized protein. (571 aa)    
Predicted Functional Partners:
nck1
Cytoplasmic protein.
    
 
 0.674
nck2
Cytoplasmic protein.
    
 
 0.674
ENSORLP00000037465
Uncharacterized protein.
  
     0.461
dact3
Uncharacterized protein.
  
     0.428
lag3
Uncharacterized protein.
  
     0.427
LOC101162422
Uncharacterized protein.
  
     0.416
Ccdc71
Uncharacterized protein.
  
     0.415
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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