Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
atoh1Atonal bHLH transcription factor 1a. (351 aa)    
Predicted Functional Partners:
pou4f3
POU domain protein.
    
 
 0.809
LOC100820722
Transcription factor 3b.
    
 
 0.676
LOC101161725
BHLH domain-containing protein.
    
 
 0.676
tcf12
Transcription factor 12.
    
 
 0.676
TCF4
Transcription factor 4.
    
 
 0.676
tcf3
E2A2 transcription factor.
    
 
 0.676
LOC101157964
POU domain protein.
    
 
 0.631
ENSORLP00000041481
Oligodendrocyte transcription factor 1.
    
 
 0.601
atp1b2
Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.
      
 0.552
H2M9H6_ORYLA
Achaete-scute family bHLH transcription factor 1b.
   
 
 0.546
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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