STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atoh1Atonal bHLH transcription factor 1a. (351 aa)    
Predicted Functional Partners:
pou4f3
POU domain protein.
      
 0.695
ENSORLP00000041481
Oligodendrocyte transcription factor 1.
   
 
 0.587
LOC100820722
Transcription factor 3b.
    
 
 0.550
LOC101161725
BHLH domain-containing protein.
    
 
 0.550
tcf12
Transcription factor 12.
    
 
 0.550
TCF4
Transcription factor 4.
    
 
 0.550
tcf3
E2A2 transcription factor.
    
 
 0.550
CNP
2',3'-cyclic nucleotide 3' phosphodiesterase.
      
 0.519
LOC101175525
Myosin VIb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.500
otog
Otogelin.
   
  
 0.439
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.