STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubfd1Ubiquitin family domain containing 1. (285 aa)    
Predicted Functional Partners:
psmc4
Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.
   
 0.959
psmd12
Proteasome 26S subunit, non-ATPase 12.
   
 0.958
psmc2
Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.
   
 0.955
psmd7
Proteasome 26S subunit, non-ATPase 7.
   
 0.953
psmc3
Proteasome 26S subunit ATPase 3; Belongs to the AAA ATPase family.
   
 0.951
psmc1
Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.
   
 0.949
psmc5
Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.
   
 0.948
psmd6
Proteasome 26S subunit, non-ATPase 6.
   
 0.946
psmd3
Proteasome 26S subunit, non-ATPase 3.
   
 0.946
psmd13
Proteasome 26S subunit, non-ATPase 13.
   
 0.945
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.