Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LJF9_ORYLAUncharacterized protein. (89 aa)    
Predicted Functional Partners:
H2MFT6_ORYLA
Uncharacterized protein.
    
   0.737
grid2ip
Glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, b.
   
 0.590
LOC101160910
Glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, a.
   
 0.590
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.540
cbln1
Cerebellin 1 precursor.
   
 
 0.536
H2MFS1_ORYLA
Uncharacterized protein.
    
   0.458
Ak9
Uncharacterized protein.
    
   0.458
ENSORLP00000041328
Uncharacterized protein.
  
     0.437
cfap44
WD_REPEATS_REGION domain-containing protein.
    
   0.429
pacrg
PARK2 co-regulated.
    
   0.424
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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