Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
opgbUncharacterized protein. (292 aa)    
Predicted Functional Partners:
LOC101161466
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
     
  0.977
opga
TNFR-Cys domain-containing protein.
  
  
 
0.905
LOC105354544
TNF superfamily member 14; Belongs to the tumor necrosis factor family.
     
 0.902
LOC101167049
CD40 ligand; Belongs to the tumor necrosis factor family.
     
  0.900
LOC101159737
Fas ligand (TNF superfamily, member 6); Belongs to the tumor necrosis factor family.
     
  0.900
tmem38a
Transmembrane protein 38A.
      
 0.645
TMEM38B
Transmembrane protein 38B.
      
 0.446
RAB8A
RAB8A, member RAS oncogene family.
      
 0.440
LOC101170877
RAB8A, member RAS oncogene family.
      
 0.440
comp
Cartilage oligomeric matrix protein.
      
 0.427
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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