ltn1 protein (Oryzias latipes) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Cooccurrence

Coexpression

Experiments

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[Homology]

Score

ltn1

RING-type domain-containing protein. (1761 aa)

Predicted Functional Partners:

trip12

0.980

NEMF

0.978

tcf25

0.915

rpl23a

0.808

rpl11

0.791

rpl8

0.745

rpl9

0.735

rpl13a

0.726

rpl31

0.722

RPL27A

0.716

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NEMF	RPL27A	ENSORLP00000016023	ENSORLP00000001409	Nuclear export mediator factor.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.718
NEMF	ltn1	ENSORLP00000016023	ENSORLP00000006172	Nuclear export mediator factor.	RING-type domain-containing protein.	0.978
NEMF	rpl11	ENSORLP00000016023	ENSORLP00000030736	Nuclear export mediator factor.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.864
NEMF	rpl13a	ENSORLP00000016023	ENSORLP00000018301	Nuclear export mediator factor.	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.836
NEMF	rpl23a	ENSORLP00000016023	ENSORLP00000006953	Nuclear export mediator factor.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.848
NEMF	rpl31	ENSORLP00000016023	ENSORLP00000006524	Nuclear export mediator factor.	Ribosomal protein L31.	0.709
NEMF	rpl8	ENSORLP00000016023	ENSORLP00000013387	Nuclear export mediator factor.	60S ribosomal protein L8.	0.830
NEMF	rpl9	ENSORLP00000016023	ENSORLP00000007030	Nuclear export mediator factor.	Ribosomal protein L9.	0.830
NEMF	tcf25	ENSORLP00000016023	ENSORLP00000011773	Nuclear export mediator factor.	Transcription factor 25 (basic helix-loop-helix).	0.908
RPL27A	NEMF	ENSORLP00000001409	ENSORLP00000016023	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Nuclear export mediator factor.	0.718
RPL27A	ltn1	ENSORLP00000001409	ENSORLP00000006172	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	RING-type domain-containing protein.	0.716
RPL27A	rpl11	ENSORLP00000001409	ENSORLP00000030736	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.999
RPL27A	rpl13a	ENSORLP00000001409	ENSORLP00000018301	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.999
RPL27A	rpl23a	ENSORLP00000001409	ENSORLP00000006953	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.999
RPL27A	rpl31	ENSORLP00000001409	ENSORLP00000006524	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Ribosomal protein L31.	0.999
RPL27A	rpl8	ENSORLP00000001409	ENSORLP00000013387	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	60S ribosomal protein L8.	0.999
RPL27A	rpl9	ENSORLP00000001409	ENSORLP00000007030	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	Ribosomal protein L9.	0.999
ltn1	NEMF	ENSORLP00000006172	ENSORLP00000016023	RING-type domain-containing protein.	Nuclear export mediator factor.	0.978
ltn1	RPL27A	ENSORLP00000006172	ENSORLP00000001409	RING-type domain-containing protein.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.716
ltn1	rpl11	ENSORLP00000006172	ENSORLP00000030736	RING-type domain-containing protein.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.791