Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ltn1RING-type domain-containing protein. (1761 aa)    
Predicted Functional Partners:
NEMF
Nuclear export mediator factor.
   
 0.998
tcf25
Transcription factor 25 (basic helix-loop-helix).
   
 0.996
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
    
 0.931
ubc
Ubiquitin B.
    
 0.896
rplp0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
    
 0.894
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 0.894
rpl30
Ribosomal protein L30.
    
  0.892
ENSORLP00000035584
Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
    
  0.892
rpl32
Ribosomal protein L32.
    
  0.892
rpl29
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
    
  0.892
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.