Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pggt1bProtein geranylgeranyltransferase type I, beta subunit. (364 aa)    
Predicted Functional Partners:
fnta
Farnesyltransferase, CAAX box, alpha.
    
 0.999
ammecr1
AMMECR1 domain-containing protein.
    
   0.893
churc1
Churchill domain containing 1.
    
 
 0.742
LOC101160126
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
    
 
 0.742
ggps1
Geranylgeranyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.
      
 0.685
LOC101163844
Uncharacterized protein.
    
 
 0.666
LOC101170445
Hes related family bHLH transcription factor with YRPW motif like.
    
 
 0.666
LOC101169991
Uncharacterized protein.
    
 
 0.666
hey1
Hes-related family bHLH transcription factor with YRPW motif 1.
    
 
 0.666
CCDC112
Coiled-coil domain containing 112.
 
  
 
 0.623
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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