STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157725Collectin subfamily member 10. (218 aa)    
Predicted Functional Partners:
H2MAB2_ORYLA
Complement component 1, r subcomponent; Belongs to the peptidase S1 family.
    
 0.637
H2MAD0_ORYLA
Uncharacterized protein; Belongs to the peptidase S1 family.
    
 0.637
LOC101167064
Layilin a.
      
 0.614
SELE
Selectin E.
      
 0.589
atrn
Attractin.
      
 0.589
CLEC3B
C-type lectin domain family 3, member Bb.
      
 0.586
stab1
Stabilin 1.
   
  
 0.580
ENSORLP00000043804
Uncharacterized protein.
    
 0.560
ENSORLP00000028880
Uncharacterized protein.
  
 
  0.543
ENSORLP00000027886
C-type lectin domain-containing protein.
  
 
0.540
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.