STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LJL0_ORYLAUncharacterized protein. (199 aa)    
Predicted Functional Partners:
H2LJK9_ORYLA
Poly [ADP-ribose] polymerase.
 
      0.899
pgk1
Phosphoglycerate kinase.
  
 0.853
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.794
mycbpap
Uncharacterized protein.
  
 0.766
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 
 0.764
LOC101159663
Enolase 1b, (alpha).
  
 0.758
eno1
Enolase 1a, (alpha).
  
 0.758
ENO2
Enolase 2.
  
 0.758
LOC101165077
Enolase 2.
  
 0.758
rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
  0.748
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.