STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100820722Transcription factor 3b. (658 aa)    
Predicted Functional Partners:
H2MFW7_ORYLA
BHLH domain-containing protein.
    
 0.785
LOC101174459
T-cell acute lymphocytic leukemia 1.
    
 0.785
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.773
myf5
Myogenic factor.
    
 0.761
myf6
Myogenic factor 6.
    
 0.761
LOC105357454
Myogenic factor.
    
 0.761
myod1
Myogenic factor.
    
 0.761
H2M9H6_ORYLA
Achaete-scute family bHLH transcription factor 1b.
   
 0.759
ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 0.759
id2
Inhibitor of DNA binding 2a.
    
 
 0.756
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.