Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC112Coiled-coil domain containing 112. (499 aa)    
Predicted Functional Partners:
H2LX96_ORYLA
Uncharacterized protein.
    
 
 0.927
pggt1b
Protein geranylgeranyltransferase type I, beta subunit.
 
  
 
 0.623
nexmif
Neurite extension and migration factor b.
      
 0.601
fem1b
Fem-1 homolog b (C. elegans).
   
 0.526
rlim
Ring finger protein, LIM domain interacting.
    
 
 0.504
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.465
st8sia2
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2; Belongs to the glycosyltransferase 29 family.
     
 0.442
fem1c
Fem-1 homolog c (C. elegans).
   
 0.422
FEM1A
Fem-1 homolog A.
   
 0.422
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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