Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mettl21cZgc:92518. (216 aa)    
Predicted Functional Partners:
med25
Mediator complex subunit 25.
      
 0.850
ino80c
INO80 complex subunit C.
      
 0.691
LOC101163022
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.659
SUCNR1
Succinate receptor 1; Belongs to the G-protein coupled receptor 1 family.
      
 0.654
H2LQ54_ORYLA
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.619
LOC101157715
Bone morphogenetic protein 10, like.
      
 0.615
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.548
etfb
Electron transfer flavoprotein subunit beta.
    
 0.543
spata5l1
Spermatogenesis associated 5-like 1.
   
 0.528
bmp10
Bone morphogenetic protein 10.
      
 0.500
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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