mettl21c protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mettl21c

Zgc:92518. (216 aa)

Predicted Functional Partners:

LOC101163022

0.783

SUCNR1

0.660

LOC101157715

0.588

H2LQ54_ORYLA

0.586

hsp70-5

0.581

hsp70-3

0.581

vcp

0.580

spata5l1

0.574

bmp10

0.569

LOC101163237

0.566

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2LQ54_ORYLA	LOC101157715	ENSORLP00000008192	ENSORLP00000041225	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Bone morphogenetic protein 10, like.	0.561
H2LQ54_ORYLA	LOC101163237	ENSORLP00000008192	ENSORLP00000025156	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Growth differentiation factor 2.	0.507
H2LQ54_ORYLA	SUCNR1	ENSORLP00000008192	ENSORLP00000007457	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Succinate receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.586
H2LQ54_ORYLA	bmp10	ENSORLP00000008192	ENSORLP00000019448	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Bone morphogenetic protein 10.	0.510
H2LQ54_ORYLA	mettl21c	ENSORLP00000008192	ENSORLP00000006247	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Zgc:92518.	0.586
LOC101157715	H2LQ54_ORYLA	ENSORLP00000041225	ENSORLP00000008192	Bone morphogenetic protein 10, like.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.561
LOC101157715	LOC101163022	ENSORLP00000041225	ENSORLP00000011896	Bone morphogenetic protein 10, like.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.589
LOC101157715	LOC101163237	ENSORLP00000041225	ENSORLP00000025156	Bone morphogenetic protein 10, like.	Growth differentiation factor 2.	0.903
LOC101157715	SUCNR1	ENSORLP00000041225	ENSORLP00000007457	Bone morphogenetic protein 10, like.	Succinate receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.603
LOC101157715	bmp10	ENSORLP00000041225	ENSORLP00000019448	Bone morphogenetic protein 10, like.	Bone morphogenetic protein 10.	0.908
LOC101157715	mettl21c	ENSORLP00000041225	ENSORLP00000006247	Bone morphogenetic protein 10, like.	Zgc:92518.	0.588
LOC101163022	LOC101157715	ENSORLP00000011896	ENSORLP00000041225	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Bone morphogenetic protein 10, like.	0.589
LOC101163022	LOC101163237	ENSORLP00000011896	ENSORLP00000025156	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Growth differentiation factor 2.	0.569
LOC101163022	SUCNR1	ENSORLP00000011896	ENSORLP00000007457	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Succinate receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.783
LOC101163022	bmp10	ENSORLP00000011896	ENSORLP00000019448	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Bone morphogenetic protein 10.	0.582
LOC101163022	mettl21c	ENSORLP00000011896	ENSORLP00000006247	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Zgc:92518.	0.783
LOC101163237	H2LQ54_ORYLA	ENSORLP00000025156	ENSORLP00000008192	Growth differentiation factor 2.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.507
LOC101163237	LOC101157715	ENSORLP00000025156	ENSORLP00000041225	Growth differentiation factor 2.	Bone morphogenetic protein 10, like.	0.903
LOC101163237	LOC101163022	ENSORLP00000025156	ENSORLP00000011896	Growth differentiation factor 2.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.569
LOC101163237	SUCNR1	ENSORLP00000025156	ENSORLP00000007457	Growth differentiation factor 2.	Succinate receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.582