STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pank4Pantothenate kinase. (769 aa)    
Predicted Functional Partners:
ppcs
Phosphopantothenoylcysteine synthetase.
     
 0.948
ppcdc
Phosphopantothenoylcysteine decarboxylase.
     
 0.796
coasy
CoA synthase.
    
 
 0.697
dcakd
Dephospho-CoA kinase domain containing.
    
 
 0.692
LOC101168042
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
      
 0.690
rrp8
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
      
 0.690
armt1
Acidic residue methyltransferase 1.
      
 0.690
mlx
MAX dimerization protein MLX.
      
 0.690
tpk1
Thiamine pyrophosphokinase; Belongs to the thiamine pyrophosphokinase family.
      
 0.690
anapc16
Anaphase promoting complex subunit 16.
      
 0.652
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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