STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162660Histone PARylation factor 1. (352 aa)    
Predicted Functional Partners:
parp2
Poly [ADP-ribose] polymerase.
    
 
 0.898
parp1
Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.
    
 
 0.875
parp3
Poly [ADP-ribose] polymerase.
    
 
 0.703
cwc22
CWC22 spliceosome associated protein homolog.
      
 0.695
gmppb
GDP-mannose pyrophosphorylase B.
   
   0.672
larp7
La ribonucleoprotein domain family, member 7.
   
  
 0.640
exosc8
Exosome component 8.
   
  
 0.627
adprhl2
ADP-ribosylhydrolase like 2.
      
 0.617
LOC101165977
C2 domain-containing protein.
      
 0.609
syt1
Synaptotagmin Ia.
      
 0.607
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.