Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168626Transmembrane p24 trafficking protein 7. (214 aa)    
Predicted Functional Partners:
LOC101161906
Transmembrane p24 trafficking protein 2.
   
 0.925
tmed10
Transmembrane p24 trafficking protein 10.
   
 0.914
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.891
surf4
Surfeit 4.
   
 0.854
LOC101173315
Transmembrane p24 trafficking protein 9.
   
 0.834
LOC101175398
Transmembrane p24 trafficking protein 4.
   
 0.834
LOC101170323
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.820
traf3
TNF receptor-associated factor.
    
 0.820
map3k7
Mitogen-activated protein kinase kinase kinase 7.
   
 0.787
LOC105356874
Protein kinase domain-containing protein.
   
 0.787
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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