STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm22RNA binding motif protein 22. (426 aa)    
Predicted Functional Partners:
xab2
XPA binding protein 2.
   
 0.999
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 0.999
bud31
BUD31 homolog.
   
 0.998
snw1
SNW domain containing 1.
   
 0.998
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.996
plrg1
Pleiotropic regulator 1.
   
 0.996
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 0.996
isy1
ISY1 splicing factor homolog.
   
 0.995
prpf19
Pre-mRNA processing factor 19.
   
 0.993
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 
 0.993
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.