STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdkal1CDK5 regulatory subunit associated protein 1-like 1. (573 aa)    
Predicted Functional Partners:
urod
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.847
exosc3
Exosome component 3.
    
 
 0.817
fto
FTO alpha-ketoglutarate dependent dioxygenase.
      
 0.716
mms19
MMS19 homolog, cytosolic iron-sulfur assembly component.
   
 
 0.682
AIFM2
Apoptosis inducing factor mitochondria associated 2.
      
 0.665
TMEM38B
Transmembrane protein 38B.
   
  
 0.655
tmlhe
Trimethyllysine hydroxylase, epsilon.
      
 0.654
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
  
 0.645
scly
Selenocysteine lyase.
  
  
 0.636
pla2g6
Phospholipase A2, group VI (cytosolic, calcium-independent).
      
 0.633
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.