Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
larp7La ribonucleoprotein domain family, member 7. (544 aa)    
Predicted Functional Partners:
mepce
Methylphosphate capping enzyme.
   
 
 0.997
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
   
 0.992
hexim1
HEXIM P-TEFb complex subunit 1.
    
 
 0.989
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
   
 0.962
sf3b1
Splicing factor 3b, subunit 1.
   
 0.931
ssb
Small RNA binding exonuclease protection factor La.
   
 
 0.929
tut1
Terminal uridylyl transferase 1, U6 snRNA-specific.
    
 0.924
ccnt1
Cyclin T1; Belongs to the cyclin family.
   
 0.923
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
   
 
 0.919
nop56
NOP56 ribonucleoprotein homolog.
   
 
 0.910
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.