Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160743Homeobox A1a. (323 aa)    
Predicted Functional Partners:
pbx1
Homeobox domain-containing protein.
    
 0.780
LOC101160104
Pre-B-cell leukemia homeobox 1b.
    
 0.780
LOC101159440
Pre-B-cell leukemia transcription factor 4.
    
 0.780
pbx3
Homeobox domain-containing protein.
    
 0.780
LOC101172525
Pre-B-cell leukemia homeobox 2.
    
 0.780
pgs1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Functions in the biosynthesis of the anionic phospholipids phosphatidylglycerol and cardiolipin; Belongs to the CDP-alcohol phosphatidyltransferase class-II family.
      
 0.658
LOC101172732
Glycoprotein IX (platelet).
    
   0.626
lnpk
Limb and neural patterns a.
      
 0.514
hoxb1
Homeobox B1b.
  
0.506
nr6a1
Nuclear receptor subfamily 6, group A, member 1a.
    
 0.475
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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