Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173926One cut domain family member. (443 aa)    
Predicted Functional Partners:
galm
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
      
 0.827
LOC101169858
Deoxyribonuclease; Belongs to the DNase I family.
      
 0.783
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
      
 0.655
WDR7
WD repeat domain 7.
   
  
 0.612
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
      
 0.608
hnf1b
HNF1 homeobox Ba.
     
 0.527
fam214a
Family with sequence similarity 214 member A.
      
 0.512
LOC101159996
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 
 0.510
ccng2
Cyclin G2; Belongs to the cyclin family.
    
 
 0.510
capsl
Calcyphosine-like b.
   
  
 0.486
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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