STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
parp16Poly [ADP-ribose] polymerase. (328 aa)    
Predicted Functional Partners:
rnf13
Ring finger protein 13.
    
 
 0.814
CASTOR1
Cytosolic arginine sensor for mTORC1 subunit 1.
    
 0.683
castor2
Cytosolic arginine sensor for mTORC1 subunit 2.
    
 0.683
mios
Missing oocyte, meiosis regulator, homolog (Drosophila).
    
 0.668
wdr24
WD repeat domain 24.
    
 0.574
parp3
Poly [ADP-ribose] polymerase.
      
 0.559
PARP11
Poly [ADP-ribose] polymerase.
      
 0.558
parp2
Poly [ADP-ribose] polymerase.
      
 0.558
wdr59
WD repeat domain 59.
    
 0.557
tmbim6
Testis enhanced gene transcript (BAX inhibitor 1); Belongs to the BI1 family.
      
 0.529
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.