Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
parp16Poly [ADP-ribose] polymerase. (328 aa)    
Predicted Functional Partners:
cog1
Component of oligomeric golgi complex 1.
    
   0.824
rnf13
Ring finger protein 13.
    
 
 0.795
parp3
Poly [ADP-ribose] polymerase.
      
 0.760
wdr59
WD repeat domain 59.
    
 0.753
mios
Missing oocyte, meiosis regulator, homolog (Drosophila).
    
 0.752
wdr24
WD repeat domain 24.
    
 0.748
parp2
Poly [ADP-ribose] polymerase.
      
 0.717
COG5
Component of oligomeric golgi complex 5.
    
   0.716
DDRGK1
DDRGK domain containing 1.
      
 0.711
CASTOR1
Cytosolic arginine sensor for mTORC1 subunit 1.
   
 0.709
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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