Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LJV8_ORYLAUncharacterized protein. (564 aa)    
Predicted Functional Partners:
ENSORLP00000043402
Uncharacterized protein.
 
    
0.913
Adamtsl1
Uncharacterized protein.
 
      0.900
adamts13
ADAM metallopeptidase with thrombospondin type 1 motif, 13.
     
 0.564
adamts6
ADAM metallopeptidase with thrombospondin type 1 motif, 6.
     
 0.545
LOC101172968
ADAM metallopeptidase with thrombospondin type 1 motif, 10.
     
 0.545
dcc
DCC netrin 1 receptor.
   
 
 0.518
igdcc4
Immunoglobulin superfamily, DCC subclass, member 4.
   
 
 0.518
neo1
Neogenin 1b.
   
 
 0.518
adamts18
ADAM metallopeptidase with thrombospondin type 1 motif, 18.
     
 0.509
adamts16
ADAM metallopeptidase with thrombospondin type 1 motif, 16.
     
 0.509
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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