Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
c12h18orf25Zgc:77838. (429 aa)    
Predicted Functional Partners:
sumo1
Small ubiquitin-related modifier.
    
 
 0.918
LOC101163644
Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.
    
   0.659
LOC101156432
Zgc:86598; Belongs to the protein kinase superfamily.
    
   0.659
CSNK2A2
Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.
    
   0.659
LOC101164317
BZIP domain-containing protein.
    
   0.606
tp53bp1
Tumor protein p53 binding protein, 1.
    
   0.598
phf21a
PHD finger protein 21Ab.
      
 0.597
naa25
N(alpha)-acetyltransferase 25, NatB auxiliary subunit.
      
 0.581
rhno1
Si:ch73-352p4.5.
      
 0.498
fyttd1
Uncharacterized protein.
  
     0.407
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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