STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCDC2Doublecortin domain containing 2. (403 aa)    
Predicted Functional Partners:
pot1
Protection of telomeres 1 homolog.
    
 
 0.621
pcm1
Pericentriolar material 1.
      
 0.593
tsc1
TSC complex subunit 1b.
      
 0.586
slc12a3
Uncharacterized protein.
      
 0.558
ahi1
Abelson helper integration site 1.
      
 0.514
LOC111946865
Pericentrin.
      
 0.505
cmip
C-Maf inducing protein.
      
 0.491
ABCB4
ATP binding cassette subfamily B member 4.
    
 
 0.489
dnaaf4
Dynein axonemal assembly factor 4.
      
 0.487
alx1
ALX homeobox 1.
      
 0.468
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.