Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DCDC2Doublecortin domain containing 2. (403 aa)    
Predicted Functional Partners:
dnaaf4
Dynein axonemal assembly factor 4.
      
 0.695
cmip
C-Maf inducing protein.
      
 0.694
allc
Allantoicase.
      
 0.671
timeless
Timeless circadian clock.
      
 0.640
tsc1
TSC complex subunit 1b.
      
 0.620
gtf2ird1
GTF2I repeat domain containing 1.
      
 0.562
pot1
Protection of telomeres 1 homolog.
    
 
 0.541
pcm1
Pericentriolar material 1.
      
 0.534
ahi1
Abelson helper integration site 1.
      
 0.501
prorp
Protein only RNase P catalytic subunit.
      
 0.470
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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